Databases available for zebrafish BLAST search
Nucleotide Sequence Databases (use blastn, tblastn, or tblastx)
Sanger/NCBI raw WGS zebrafish traces
Whole genome shotgun sequence (Sanger Center) formated with unique trace identification (ti) numbers (NCBI). ti numbers facilitate retreival of sequence data from the NCBI Trace db site.
The Sanger Center Assembly of the zebrafish genome, December 2003. See the Sanger Center site for information about this assembly.
Sequences from zebrafish Bac ends from Max Planck Institute and Sanger Center.
Protein Sequence Databases (use blastx or blastp)
Lung Cilia Proteins
213 protein sequences from this publication:
A proteomic analysis of human cilia: identification of novel components.
Mol Cell Proteomics. 2002 Jun;1(6):451-65.
Ostrowski LE, Blackburn K, Radde KM, Moyer MB, Schlatzer DM, Moseley A, Boucher RC.
Cystic Fibrosis/Pulmonary Research and Treatment Center, The University of North Carolina, School of Medicine, Chapel Hill, North Carolina 27599-7248, USA. ostro@med.unc.edu
Cilia and Basal Body Proteins
Comparative genomics identifies a flagellar and basal body proteome that includes the BBS5 human disease gene.
Cell. 2004 May 14;117(4):541-52
Li JB, Gerdes JM, Haycraft CJ, Fan Y, Teslovich TM, May-Simera H, Li H, Blacque OE, Li L, Leitch CC, Lewis RA, Green JS, Parfrey PS, Leroux MR, Davidson WS, Beales PL, Guay-Woodford LM, Yoder BK, Stormo GD, Katsanis N, Dutcher SK.
Department of Genetics, Washington University School of Medicine, St. Louis, MO 63110, USA.
Drosophila Cilia and Flagella proteins
Decoding cilia function: defining specialized genes required for compartmentalized cilia biogenesis.
Cell. 2004 May 14;117(4):527-39
Avidor-Reiss T, Maer AM, Koundakjian E, Polyanovsky A, Keil T, Subramaniam S, Zuker CS.
Howard Hughes Medical Institute and Division of Biological Sciences and Department of Neurosciences, University of California at San Diego, La Jolla, CA 92093, USA